Bioinformatics & Genome Research

The Table of Contents for the book is as follows:

• KEYNOTE SPEAKERS
  • Generation and Visualization of Patterns on Molecular Surfaces: Tools for the Understanding of Molecular Recognition Strategies
• DATABASE INTEGRATION/INTEROPERABILITY
  • Neural Networks for Molecular Sequence Classification and Database Organization
  • ProLink: Relational Integration of Data From Protein Sequence, Domain, Pattern and Structure Databases
  • A Software Framework to Assist in Knowledge Discovery from Macromolecular Structure Data
  • Database Retrieval System for Complicated Databases that Supports Database Integration
  • XBio: A Molecular Biology Database and Tool Workbench
• GENOME REARRANGEMENT
  • Algorithms for Genome Rearrangements: Herpesvirus Evolution as a Test Case
  • Measurements of Similarity of Synteny Groups and an Analysis of Genome Rearrangements in the Evolution of Mammals
• MOLECULAR INFORMATICS OF HIV
  • In Silico Study of HIV Tropism Switch
  • Spatial and Temporal Patterns of Human CD4 T-cell Depletion in hu-PBL-SCID Mice Infected with Human Immunodeficiency Virus
  • Molecular Epidemiology of HIV
  • Random Field Analysis of Tissue Sections in HIV Infection
• NUCLEIC ACID AND PROTEIN SEQUENCE RESEARCH
  • SEARCH: Locating and Identifying Genes and Intron-Exon Junctions in Large Genomic Sequences Using Parallel Computers
  • Taxonomy of Simple Amino Acid Sequences
  • Prediction of the Exon-Intron Structure and Multicriterial Optimization
• COMPUTATIONAL/THEORETICAL APPROACHES TO GENE REGULATION AND METABOLISM
  • Visualization and Animation of Metabolic Bottlenecks
  • Identification of Consensus Patterns in Unaligned DNA and Protein Sequences: a Large-Deviation Statistical Basis for Penalizing Gaps
  • Logical Analysis of Genetic Regulatory Networks
  • Automated Drawing of Metabolic Pathways
  • Gene Circuits for Eve Stripes: The Dynamics of Segment Determination in Drosophila
  • A Relational Database Model for Metabolic Information
  • Computational Methods for Complex Metabolic Systems: Representation of Multiple Levels of Detail
  • TRANSFAC Database as a Tool for the Recognition of Regulatory Genomic Sequences
• METHODS FOR UNDERSTANDING GENETIC DATA THROUGH GRAPHIC DISPLAYS
  • Querying a Genome Database Using Graphs
  • Gaining Information about Distant Homologies from Fasta Searches
• VISUALIZATION OF BIOLOGICAL PROCESSES
  • Techniques for Modeling Newly-Discovered Proteins
  • Simulating Simultaneous Growth of Nervecells – A Contribution to Parallel Problem Solving in Neurobiology
• TOOLS AND TECHNIQUES FOR GENOME ANALYSES
  • Automated Integration of Genomic Physical Mapping Data via Parallel Simulated Annealing
  • Discrimination of Tyrosine and Serine/Threonine Kinase Sub-Families by Hidden Markov Models
  • A Tool for Identifying Nonrandom Clusters of Point Markers on DNA Sequences
  • Multiple Protein-Sequence Alignment Methods: How Well Do They Perform?
  • The Detection of Fuzzy Repetitive Patterns in Long Strings with Application to Microsatellite Mapping
  • Multiple Sequence Alignment Editor Featured by Constraint-Based Parallel Iterative Aligner
  • GenTool™: Integrated Sequence Analysis Tools for Distributed High Performance Platforms
• POSTERS
  • The Analysis of K-Tuple Distribution in the Eukaryotic Promoter Database Using the Winner-Take-All System
  • A Principal Component Analysis of Codon Usage Among Lambdoid Bacteriophage
  • On the Hypercube Structure of the Genetic Code
  • Rapid and Inexpensive Method for Genomic DNA Isolation from Mammalian Tissue
  • Recognition of Poly-A signals with Hamming Clustering
  • Homologous to EF-Tu/EF-1α Proteins: Structure Comparison and Phylogenetic Tree
  • Visualization of Codon Data Compression
  • Linguistic and Genetic Complexity
  • Statistical Analysis of Human DNA Sequences in the Vicinity of Poly(A) Signal
• PANELS
  • Panel Dicussion on Technology Transfer
• SUMMARY