We have examined tin-polymetallic ore, a complex mixture of cassiterite (SnO2) and sulfides, by micro-PIXE. Tin-polymetallic ore is one of the major sources of technologically important “rare metals”, especially of indium and bismuth, usually as trace elements. In addition to such rare metals, silver is another important trace component in the ore. But the trace elemental distribution of tin-polymetallic deposit has not well been described due to the small size of constituent minerals, complex ore texture, and lack of analytical method to detect trace elements in a small area. PIXE with a proton microbeam could be an effective tool to solve this problem by delineating the distribution of these trace elements among carrier minerals with the required sensitivity. Thus we have applied PIXE with the CSIRO’s proton microprobe to a tin-polymetallic ore from Canada. The result showed that micro-PIXE is an essential tool to study trace element distribution in such a complex ore.