It is known that the smallest size of the structures of the Universe with the weakly interacting massive dark matter is determined by the scale that enters the Hubble horizon at the time of kinetic decoupling of WIMP. This comes from the fact that the perturbation at smaller scales is erased due to the collisional damping during the kinetic decoupling. However the isocurvature mode is not affected and continue to be constant. We discuss about the generation of the isocurvature mode of WIMP dark matter at small scales recently found by Choi, Gong, and Shin1 and its implications for the indirect detection of dark matter through the formation of the small size of halos.