In this work we present the status of the Brazilian program on scientific time and frequency metrology established at Center of Optical and Photonical Science, in São Carlos four years ago [1]. We report major shifts evaluated, in order to characterize our standard. We have applied the method proposed by Makdissi et.al. [2,3] to our clock in order to determine the Rabi frequency, the second-order Doppler shift and the end-to-end cavity phase shift. By this method, we could also obtain information about the behavior of the shifts as a function of the modulation amplitude. The improvements here reported were responsible for a gain of two orders of magnitude in the frequency standard's stability. We present the evaluation of our frequency standard and a progress report of our atomic fountain.