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The Jones polynomial of a knot in 3-space is a Laurent polynomial in q, with integer coefficients. Many people have pondered why this is so, and what a proper generalization of the Jones polynomial for knots in other closed 3-manifolds is. Our paper centers around this question. After reviewing several existing definitions of the Jones polynomial, we argue that the Jones polynomial is really an analytic function, in the sense of Habiro. Using this, we extend the holonomicity properties of the colored Jones function of a knot in 3-space to the case of a knot in an integer homology sphere, and we formulate an analogue of the AJ Conjecture. Our main tools are various integrality properties of topological quantum field theory invariants of links in 3-manifolds, manifested in Habiro's work on the colored Jones function.
The AJ conjecture, formulated by Garoufalidis, relates the A-polynomial and the colored Jones polynomial of a knot in the 3-sphere. It has been confirmed for all torus knots, some classes of two-bridge knots and pretzel knots, and most cable knots over torus knots. The strong AJ conjecture, formulated by Sikora, relates the A-ideal and the colored Jones polynomial of a knot. It was confirmed for all torus knots. In this paper we confirm the strong AJ conjecture for most cable knots over torus knots.