Narrow Results

Foundation models (FMs) have rapidly evolved and have achieved significant accomplishments in computer vision tasks. Specifically, the prompt mechanism conveniently allows users to integrate image prior information into the model, making it possible to apply models without any training. Therefore, we proposed a workflow based on foundation models and zero training to solve the tasks of photoacoustic (PA) image processing. We employed the Segment Anything Model (SAM) by setting simple prompts and integrating the model’s outputs with prior knowledge of the imaged objects to accomplish various tasks, including: (1) removing the skin signal in three-dimensional PA image rendering; (2) dual speed-of-sound reconstruction, and (3) segmentation of finger blood vessels. Through these demonstrations, we have concluded that FMs can be directly applied in PA imaging without the requirement for network design and training. This potentially allows for a hands-on, convenient approach to achieving efficient and accurate segmentation of PA images. This paper serves as a comprehensive tutorial, facilitating the mastery of the technique through the provision of code and sample datasets.

Lack of diagnosis coding is a barrier to leveraging veterinary notes for medical and public health research. Previous work is limited to develop specialized rule-based or customized supervised learning models to predict diagnosis coding, which is tedious and not easily transferable. In this work, we show that open-source large language models (LLMs) pretrained on general corpus can achieve reasonable performance in a zero-shot setting. Alpaca-7B can achieve a zero-shot F1 of 0.538 on CSU test data and 0.389 on PP test data, two standard benchmarks for coding from veterinary notes. Furthermore, with appropriate fine-tuning, the performance of LLMs can be substantially boosted, exceeding those of strong state-of-the-art supervised models. VetLLM, which is fine-tuned on Alpaca-7B using just 5000 veterinary notes, can achieve a F1 of 0.747 on CSU test data and 0.637 on PP test data. It is of note that our fine-tuning is data-efficient: using 200 notes can outperform supervised models trained with more than 100,000 notes. The findings demonstrate the great potential of leveraging LLMs for language processing tasks in medicine, and we advocate this new paradigm for processing clinical text.