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  • articleNo Access

    A Deep Sparse Representation with Random Dictionary for Hyperspectral Image Classification

    Hyperspectral image (HSI) classification methods based on deep learning have demonstrated excellent performance, while these deep learning methods take a lot of time to train the parameters. In this paper, we propose a deep sparse representation (SR) network (DSRNet) without spending a lot of time training network parameters in the feature extraction stage. The contributions of this paper are three-fold. First, we introduce random dictionary into HSI classification, and solve sparse representation model under this dictionary. Second, we extend the shallow sparse representation model to the deep sparse representation model, where the SR model needs to be solved for each layer and used to extract the deep features of HSI. Finally, we investigate the classification performance of different classifiers on the deep features extracted by using DSRNet. Experimental results show that the proposed method can achieve better classification results compared with some closely related HSI classification methods and the other state-of-the-art deep learning methods.

  • chapterOpen Access

    AN EFFICIENT ALGORITHM TO INTEGRATE NETWORK AND ATTRIBUTE DATA FOR GENE FUNCTION PREDICTION

    Label propagation methods are extremely well-suited for a variety of biomedical prediction tasks based on network data. However, these algorithms cannot be used to integrate feature-based data sources with networks. We propose an efficient learning algorithm to integrate these two types of heterogeneous data sources to perform binary prediction tasks on node features (e.g., gene prioritization, disease gene prediction). Our method, LMGraph, consists of two steps. In the first step, we extract a small set of “network features” from the nodes of networks that represent connectivity with labeled nodes in the prediction tasks. In the second step, we apply a simple weighting scheme in conjunction with linear classifiers to combine these network features with other feature data. This two-step procedure allows us to (i) learn highly scalable and computationally efficient linear classifiers, (ii) and seamlessly combine feature-based data sources with networks. Our method is much faster than label propagation which is already known to be computationally efficient on large-scale prediction problems. Experiments on multiple functional interaction networks from three species (mouse, y, C.elegans) with tens of thousands of nodes and hundreds of binary prediction tasks demonstrate the efficacy of our method.