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The convergence of terahertz spectroscopy and single molecule experimentation offers significant promise of enhancement in sensitivity and selectivity in molecular recognition, identification and quantitation germane to military and security applications. This paper provides a brief overview of the constraints set by single molecule recognition systems and reports the results of experiments which address fundamental barriers to the integration of large, patterned bio-compatible molecular opto-electronic systems with silicon based microelectronic systems. Central to this thrust is an approach involving sequential epitaxy on surface bound single stranded DNA one-dimensional substrates. The challenge of producing highly structured macromolecular substrates, which are necessary in order to implement molecular nanolithography, has been addressed experimentally by combining “designer” synthetic DNA with biosynthetically derived plasmid components. By design, these one dimensional templates are composed of domains which contain sites which are recognized, and therefore addressable by either complementary DNA sequences and/or selected enzymes. Such design is necessary in order to access the nominal 2 nm linewidth potential resolution of nanolithography on these one-dimensional substrates. The recognition and binding properties of DNA ensure that the lithographic process is intrinsically self-organizing, and therefore self-aligning, a necessity for assembly processes at the requisite resolution. Another requirement of this molecular epitaxy approach is that the substrate must be immobilized. The challenge of robust surface immobilization is being addressed via the production of the equivalent of molecular tube sockets. In this application, multi-valent core-shell fluorescent quantum dots provide a mechanism to prepare surface attachment sites with a pre-determined 1:1 attachment site : substrate (DNA) molecule ratio.

We address the problem of a single impurity atom moving in a two-dimensional (2D) layer immersed in a 3D Fermi gas. Using a variational approach, we show that in this mixed-dimensional (MD) system, there is a transition between polaron and molecule ground states, similar to the case of pure 3D. Moreover, we find that the attractive polaron energy in MD is higher than that in 3D, while molecular energy in MD is lower than that in 3D, which leads to a shift of the critical interaction strength of transition. Further analysis shows that the energy difference between 3D and MD systems is attributed to the increment of the effective mass of the impurity, which is induced by the spatial constraint on the impurity.

A novel dual time-of-flight imaging analyzer has been developed for studies of gas phase reactions and the scattering or desorption of ions and molecules from surfaces. The analyzer is capable of experimentally selecting a two-dimensional slice of particles from a three-dimensional flux without the necessity for deconvolution of the resulting velocity images by the Abel transform. The analyzer operates through ionization of the scattered species and their subsequent flight through a field-free region. This initial flight allows a dispersion according to the species natural velocity distribution. The second time of flight deflects the ions through a right angle and through a flight tube allowing dispersion according to mass or charge before detection. The analyzer offers two modes of operation — the first of these produces a mass spectrum of the desorbing species, the second produces a two-dimensional velocity map of the desorbing species. Trial results using an effusive beam source and acetone as a test gas have demonstrated the operation of the analyzer. The operation of the analyzer has been simulated and optimized to reduce ion flight aberrations. A set of orthogonal two-dimensional polynomial functions have been derived to reduce residual aberrations across a broad range of operating conditions. An upper limit to the temporal resolution of the analyzer has been established and a set of working parameters for low distortion electron beam ionization have been presented.

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Yuan Tseh Lee was instrumental in the development and construction of an apparatus that utilized crossed molecular beams, presenting a break-through technique that allowed for the understanding of the dynamics of elementary chemical reactions. This was done by following the trajectories of reactants and reaction products in single collision events, allowing the visualization of the dynamics of how chemical reactions take place. This article also highlights Prof. Lee’s belief in the severity of the consequences of global warming and his concerns relating to the need to substantially reduce carbon emissions.

The convergence of terahertz spectroscopy and single molecule experimentation offers significant promise of enhancement in sensitivity and selectivity in molecular recognition, identification and quantitation germane to military and security applications. This paper provides a brief overview of the constraints set by single molecule recognition systems and reports the results of experiments which address fundamental barriers to the integration of large, patterned bio-compatible molecular opto-electronic systems with silicon based microelectronic systems. Central to this thrust is an approach involving sequential epitaxy on surface bound single stranded DNA one-dimensional substrates. The challenge of producing highly structured macromolecular substrates, which are necessary in order to implement molecular nanolithography, has been addressed experimentally by combining “designer” synthetic DNA with biosynthetically derived plasmid components. By design, these one dimensional templates are composed of domains which contain sites which are recognized, and therefore addressable by either complementary DNA sequences and/or selected enzymes. Such design is necessary in order to access the nominal 2 nm linewidth potential resolution of nanolithography on these one-dimensional substrates. The recognition and binding properties of DNA ensure that the lithographic process is intrinsically self-organizing, and therefore self-aligning, a necessity for assembly processes at the requisite resolution. Another requirement of this molecular epitaxy approach is that the substrate must be immobilized. The challenge of robust surface immobilization is being addressed via the production of the equivalent of molecular tube sockets. In this application, multi-valent core-shell fluorescent quantum dots provide a mechanism to prepare surface attachment sites with a pre-determined 1:1 attachment site : substrate (DNA) molecule ratio.

Yuan Tseh Lee was instrumental in the development and construction of an apparatus that utilized crossed molecular beams, presenting a breakthrough technique that allowed for the understanding of the dynamics of elementary chemical reactions. This was done by following the trajectories of reactants and reaction products in single collision events, allowing the visualization of the dynamics of how chemical reactions take place. This article also highlights Prof. Lee’s belief in the severity of the consequences of global warming and his concerns relating to the need to substantially reduce carbon emissions.